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Fast, approximate kinetics of RNA folding

arXiv.org, Jan 19, 2015

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Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

PLoS One, Jan 2011, Vol.6(1), p.e16178 [Peer Reviewed Journal]

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Combinatorics of locally optimal RNA secondary structures

arXiv.org, Dec 30, 2012

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RNA folding kinetics using Monte Carlo and Gillespie algorithms?

arXiv.org, Jul 12, 2017

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5
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Maximum expected accuracy structural neighbors of an RNA secondary structure

BMC Bioinformatics, 2012, Vol.13(Suppl 5), p.S6 [Peer Reviewed Journal]

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Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA

PLoS One, Feb 2014, Vol.9(2), p.e85412 [Peer Reviewed Journal]

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Network Properties of the Ensemble of RNA Structures

PLoS One, Oct 2015, Vol.10(10), p.e0139476 [Peer Reviewed Journal]

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Integrating Chemical Footprinting Data into RNA Secondary Structure Prediction

PLoS One, Oct 2012, Vol.7(10), p.e45160 [Peer Reviewed Journal]

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by this Author/Contributor:

  1. Clote, Peter
  2. Clote, P.
  3. Dotu, I
  4. Lorenz, W.A.
  5. Gibas, Cynthia

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