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Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.

Nucleic acids research, July 2011, Vol.39, pp.W475-W478 [Peer Reviewed Journal]

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Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins (Function Prediction in Mycobacterium tuberculosis)

PLoS ONE, 2012, Vol.7(4), p.e34302 [Peer Reviewed Journal]

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SMART 7: recent updates to the protein domain annotation resource.

Nucleic acids research, January 2012, Vol.40, pp.D302-D305 [Peer Reviewed Journal]

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iPath2.0: interactive pathway explorer.

Nucleic acids research, July 2011, Vol.39, pp.W412-W415 [Peer Reviewed Journal]

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Biochemistry. Not comparable, but complementary.

Science (New York, N.Y.), October 3, 2008, Vol.322(5898), pp.56-57 [Peer Reviewed Journal]

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Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer (Constant Rate of HGT)

PLoS ONE, 2011, Vol.6(8), p.e22099 [Peer Reviewed Journal]

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Genomic variation landscape of the human gut microbiome

Schloissnig, S., M. Arumugam, S. Sunagawa, M. Mitreva, J. Tap, A. Zhu, A. Waller, et al. 2012. “Genomic variation landscape of the human gut microbiome.” Nature 493 (7430): 45-50. doi:10.1038/nature11711. http://dx.doi.org/10.1038/nature11711. [Peer Reviewed Journal]

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OGEE: an online gene essentiality database.

Nucleic acids research, January 2012, Vol.40, pp.D901-D906 [Peer Reviewed Journal]

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Network neighbors of drug targets contribute to drug side-effect similarity.

PloS one, 2011, Vol.6(7), p.e22187 [Peer Reviewed Journal]

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Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data (Comparison of Assembly of Simulated Metagenomes)

PLoS ONE, 2012, Vol.7(2), p.e31386 [Peer Reviewed Journal]

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